CDS
| Accession Number | TCMCG051C23456 |
| gbkey | CDS |
| Protein Id | XP_006380469.2 |
| Location | complement(join(10516272..10516508,10516605..10516765,10516921..10517065,10518251..10518416,10518956..10519101,10520202..10520427,10520650..10520872,10521257..10521405,10521747..10521853,10522988..10523059,10523158..10523217,10523990..10524133,10524272..10524359,10524456..10524651,10525348..10525540,10525965..10526039,10526225..10526360,10526441..10526603,10526750..10527095)) |
| Gene | LOC18100983 |
| GeneID | 18100983 |
| Organism | Populus trichocarpa |
Protein
| Length | 1010aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA17973 |
| db_source | XM_006380407.2 |
| Definition | probable RNA-dependent RNA polymerase 5 isoform X1 [Populus trichocarpa] |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGCAGAGATAAATAATGATAAAATAGTGCCACTGCCTTGTGTAGTGGAGGAACTGATAGCCAAAATCTGTAGGGAGCAGAATCGAAGGCCGCTAGAAACCAATACGAGGTTGACACTGGCTTCGTTAGGGGAAGAAGTTGCTTTAAATATTCTCTGGAGAATTTCTGGTCAAGAGATTAGAAAAAGTTTTGACGGTTTCGTTCTGCACTTGGCCAAACAGTTCTCTCCTAATATCAATGCTTCTTCTTCTTCCCCCAACATACACTCCTCCCTCTCCCCATCTCCTCAACAACCCCAGAATCGGAGCCCCATTACAACCACCCGTTTACTGATGAATTCTCAAAGTGATTCTGGTGCTCAATCTCCCATTTCATTGAAGCTTGAAGGTTCATCAACCATGGATTCACAGAGACAGAGAGGAAATGAGTCTACAACCAGTCAACATTTGGTGGCTTTGGGAGAGCTTGAGTTTAGAAAAGCCTTCCTTATCCTAAGTTACCTTGGAGGAAAAAATTTGGAAGAGGTGGTATCCGTTGATCAAATTAGGGGGTATAAGGATTTGCCAATGAGAACATTTGAGTCAAAAATTTGGGAAGCTTTTGGATGTAGGAGAGATTATATAAAGGAAGAAGATCGTGTCAAGTATCTTGATTGGGATTCTGGGAAAACACACATCTATCACTGTCATGTGGATCCGGATGGAAGTTATAGGTTCAAGGGACCTTACCTCTCCAAGCTGAGAAATGTCCTGCAAAGGACCTTGGGAGATGACAATATCTTGATGGTAAAGTTTGGGGAGGTAAAAGATGATAGAGATTCAGGGAGCAGGTCTCTGGATGATTATTTTTCCAAGTACAACAAGGTTCTTGGAGAAGGGATTCATGTTGGTTTGCGTTGTTACCGCTTTTTTGTGTTTAAAGATGGAGGCAAAGAAGAAAAAAAGAAAGACCCAACCACTTCTCCTGTCAAGTGTTTTTTTGTCCGCATGGAGTCTGTTGCATCGATTGATAATCAAGATAATATTTTGAGCGGGAAAACAATCCGTCAAGCTAGATCTGTTTTTATGCATGTGGACAATTTGTCTAGTTTGTCGAACTATATGGCTAGGTTTTCGCTGATTTTGTCAAAGACCATGAATCTGGAAGTTGATTTATCCTGTGTAGATATCAAGACAATAGCTGATGAACCATGCCGGGATAAAGATGGTAATGTTGTTTACGGTACAGATGGGAAACCTCTTATACATACAGATGGAACTGGGTTTATATCGCATGATTTGGCTTTGAAATGCCCAAAGAATCAATTCAAAGGAACTTGCCTCCGAGCTTCCAATATTGAGAGATTAAATGTTCATAATGAAGTCATGGAGCAATATCCAGAATGTCGCAATGGGGATCCACCTTTGCTGATCCAGTTTCGTCTCTTCAATAATGGTAGAGCTGTCAAGGGAACTTTCCTTGTGAATAAGAAGCTTACTCATCAAACTCTGCACATAAGGCCTTCTATGATTAAGGTTGAGACGGATCCAAAACTATCAAGTACTTTTTCAAAAAATTCATTGGAGATAGTTGGAACCAGCTCTCGACCAAAGAAAACGTTCCTTTCAAAGAATTTAATTGCACTTCTTAGCTATGGTGGTGTTCCAGAAGAGTTTTTTATGGGAATAGTGAATAATGCTCTGGAAGATGCCCATGGCATTCTCTCAAACAAAAATGCAGCTCTACGAGTTGCACTTAATTATGGGGATATGGATGATAACATTGTGGCAACAATGATTGGCTGTGGGATTCCGCTAGAAGAACCATATTTGCAATGTCGTTTGTCAATACTGATGAAGGAAGAAAAGAAGAGTCTGAAAGGAGGAAAAATACCTGTGCCTGAATCATATTATTTGATGGGGACAGCCGATCCAACTGGACTCTTGGAGAGTGATGAAGTTTGCATAATACTAGATTGTGGACAGATTTCAGGGGAGGTATTAATCTATCGGAATCCAGGTTTACATTTTGGAGATATACATATTTTAAAGGCTACATATGTAAGGGAGTTGGAAGATTTTGTTGGAAATGCTAAGTATGCTATATTTTTCCCATGCAAAGGACCACGGTCTTTGGCAGATGAGATGTCAGGTGGTGATTTTGATGGTGACATGTTTTTTGTGTCAAGAAATCCTCAGCTTCTGGAAACCTTTAAACAAACGGAACCTTGGACACCTTCTACTTCAACCCCTAATGTGCCTAACAGAAAACCAAGTGAATTCTCTGATGAGGAGTTGGAGGTTGAGCTTTTCAAACTATTTTTGAGGAACAGGTTTCAGCCAAGTTCCACTGTAGGGGTGGCAGCGGATAGCTGGCTGGCAATGATGGACCGGCTTCTAACATTGGGAAATGATTGTGCAGAAGAGATAGTTTGTATGAAAGAAAATATCAATCTGTTGATTGATATATACTATGATGCTCTAGATGCTCCAAAGAAAGGTGGAAGAAGGATTGAAGTTCCAGAAGGCTTGAAGGCAGAGCTGTTCCCACATTTTATGGGAAAAAACGAAAAGAAAACCTATCGATCTACTTCCATATTGGGAAAAATTTATGATAAAGTGAAAGCATATGAAGACATGGATCTGTCATCAAATGATGTTTGGAAACTCCCTTGCTTTGACGATGAAGTTCACGAGCTGTACCTTGTGAAGTGGAAGGAACTCTACGGTCAATACAGGAAGGAGATGCGCAATGCTCTAAAGGCTGGTGAAGAGAGCAACGACAAGGCTAATGAAGTCATAAGAAAATACAAGGAGTTCTTATATGAAGCTGCGGAATTTAATTTGAGCAAACGAAGAGATGAGGAAATCTTTGAGGAGGCCATGGCTCTATATCAGGTTTCTTACAACCATGCCAAGAGCCAAGGAGTTGTCGGAAATTGCAGCTTTGCCTGGAGAGTCGCAGGTTTAGCTCTTTGCACGCTCTACGTTTTGAAGAATCAGGGTGAAAGACCTATGATATGTTCACCATCTGCTCTGAAAGGGATTTTGTAG |
| Protein: MAEINNDKIVPLPCVVEELIAKICREQNRRPLETNTRLTLASLGEEVALNILWRISGQEIRKSFDGFVLHLAKQFSPNINASSSSPNIHSSLSPSPQQPQNRSPITTTRLLMNSQSDSGAQSPISLKLEGSSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKGIL |